Skip to content

Changelog

0.5.0

  • Added accession-file parsing for --accessions.
  • Added metadata-only mode as the preferred way to skip downloads.
  • Added exporter control strategies: all, pool, deterministic first, and metadata-ranked best.
  • Improved file-level control mapping through controlled_by_files.
  • Added nf-core and Snakemake exporters for ChIP-seq, ATAC-seq, and RNA-seq assay families.

0.1.0

  • Initial release.
  • Experiment-first search with control expansion.
  • Multi-threaded metadata fetching and downloads.
  • Paired FASTQ collapsing.
  • nf-core and Snakemake samplesheet exporters.
  • Rich progress bars for experiments and downloads.