AskJASPAR
A natural-language interface and MCP server for querying JASPAR TF binding profiles.
Software & Resources
We strongly believe in global access to open and reproducible science. Our tools, software, and resources are openly licensed and freely available for all to use and build upon. By fostering a culture of collaboration and transparency, we aim to accelerate scientific discovery and innovation that benefit all.
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ENCODEfetch
A command-line tool and Python package for retrieving matched case-control data/metadata from ENCODE.
EGAfetch
A command-line client for parallel download of data and metadata from the European Genome-phenome Archive.
RWCheck
A tool for fast retraction screening for DOIs, PubMed IDs, BibTeX and RIS references
Intervene
A tool for intersection and visualization of multiple gene or genomic region sets
JASPAR database
The open and high-quality transcription factor binding profile database
UniBind
A map of direct TF-DNA interactions in the human genome.
dbSUPER
The first integrated and interactive database of super-enhancers
JASPAR RESTful API
Programmatically accessing JASPAR data from any programming language
mCrossBase
A database of RNA-binding proteins binding motifs and crosslink sites
ith.Variant
somatic variant detection from multi-sampled genomic WGS/WES data of tumors
BiasAway CLI
A tool to generate composition-matched background sequence set
BiasAway Webserver
A webserver to generate composition-matched background sequence set
ECRcentral
A central platform for early career researchers community
imPROSE
an integrated methods to predict super-enhancers
pyJASPAR
A Pythonic interface to JASPAR transcription factor motifs
Intervene ShinyApp
A tool for intersection and visualization of multiple gene or genomic region sets
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