Open Source Tools and Resources

We strongly believe in global access to open and reproducible science. Our tools, software, and resources are openly licensed and freely available for all to use and build upon.

Featured

Intervene A tool for intersection and visualization of multiple gene or genomic region sets

software

JASPAR database The open and high-quality transcription factor binding profile database

resource database web-server

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UniBind A map of direct TF-DNA interactions in the human genome.

resource

dbSUPER The first integrated and interactive database of super-enhancers

resource database

JASPAR RESTful API Programmatically accessing JASPAR data from any programming language

software resource

mCrossBase A database of RNA-binding proteins binding motifs and crosslink sites

database resource

ith.Variant somatic variant detection from multi-sampled genomic WGS/WES data of tumors

software

BiasAway CLI A tool to generate composition-matched background sequence set

software

BiasAway Webserver A webserver to generate composition-matched background sequence set

web-server

ECRcentral A central platform for early career researchers community

resource

imPROSE an integrated methods to predict super-enhancers

software

pyJASPAR A Pythonic interface to JASPAR transcription factor motifs

software

Intervene ShinyApp A tool for intersection and visualization of multiple gene or genomic region sets

web-server